J3_8WIB_012

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8WIB|1|a|U|853, 8WIB|1|a|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_012 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1324

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8WIB|1|a|C|806
8WIB|1|a|U|807
8WIB|1|a|A|808
8WIB|1|a|G|809
*
8WIB|1|a|C|839
8WIB|1|a|G|840
8WIB|1|a|U|841
8WIB|1|a|A|842
8WIB|1|a|G|843
*
8WIB|1|a|C|850
8WIB|1|a|A|851
8WIB|1|a|U|852
8WIB|1|a|U|853
8WIB|1|a|A|854
8WIB|1|a|A|855
8WIB|1|a|G|856

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8