J3_8WIC_004

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIC_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0985

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|C|1413
8WIC|1|A|G|1414
8WIC|1|A|A|1415
8WIC|1|A|A|1416
8WIC|1|A|A|1417
8WIC|1|A|G|1418
*
8WIC|1|A|C|1843
8WIC|1|A|A|1844
8WIC|1|A|G|1845
*
8WIC|1|A|U|1857
8WIC|1|A|A|1858
8WIC|1|A|A|1859
8WIC|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains