J3_8WIC_007

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIC_007 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1089

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|U|2314
8WIC|1|A|U|2315
8WIC|1|A|G|2316
*
8WIC|1|A|C|2419
8WIC|1|A|U|2420
8WIC|1|A|A|2421
8WIC|1|A|A|2422
8WIC|1|A|C|2423
*
8WIC|1|A|G|2447
8WIC|1|A|G|2448
8WIC|1|A|A|2449
8WIC|1|A|C|2450
8WIC|1|A|A|2451
8WIC|1|A|G|2452

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain E

50S ribosomal protein L2

Chain J

50S ribosomal protein L9