J3_8WID_001

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8WID|1|a|U|853, 8WID|1|a|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WID_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1323

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8WID|1|a|C|806
8WID|1|a|U|807
8WID|1|a|A|808
8WID|1|a|G|809
*
8WID|1|a|C|839
8WID|1|a|G|840
8WID|1|a|U|841
8WID|1|a|A|842
8WID|1|a|G|843
*
8WID|1|a|C|850
8WID|1|a|A|851
8WID|1|a|U|852
8WID|1|a|U|853
8WID|1|a|A|854
8WID|1|a|A|855
8WID|1|a|G|856

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8