J3_8WID_015
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUGACAU*GCAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 8WID|1|a|U|1195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WID_015 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1602
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WID|1|a|U|972
8WID|1|a|U|973
8WID|1|a|U|974
8WID|1|a|G|975
8WID|1|a|A|976
8WID|1|a|C|977
8WID|1|a|A|978
8WID|1|a|U|979
*
8WID|1|a|G|1024
8WID|1|a|C|1025
8WID|1|a|A|1026
8WID|1|a|G|1027
*
8WID|1|a|C|1191
8WID|1|a|U|1192
8WID|1|a|U|1193
8WID|1|a|A|1194
8WID|1|a|U|1195
8WID|1|a|G|1196
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain o
- 30S ribosomal protein S14A
Coloring options: