J3_8WRC_011

3D structure

PDB id

8WRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-Resolved Ambient Temperature Kineto-Crystallographic Structure of Initiation Factor in Complex with Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.59 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8WRC|1|A|U|1212, 8WRC|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WRC_011 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1949

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8WRC|1|A|C|990
8WRC|1|A|U|991
8WRC|1|A|U|992
8WRC|1|A|G|993
8WRC|1|A|A|994
8WRC|1|A|C|995
8WRC|1|A|A|996
8WRC|1|A|U|997
*
8WRC|1|A|A|1044
8WRC|1|A|C|1045
8WRC|1|A|A|1046
8WRC|1|A|G|1047
*
8WRC|1|A|C|1210
8WRC|1|A|U|1211
8WRC|1|A|U|1212
8WRC|1|A|A|1213
8WRC|1|A|C|1214
8WRC|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z