J3_8WV1_005

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8WV1|1|A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WV1_005 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.153

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8WV1|1|A|C|321
8WV1|1|A|G|322
8WV1|1|A|A|323
8WV1|1|A|A|324
8WV1|1|A|G|325
*
8WV1|1|A|C|340
8WV1|1|A|G|341
8WV1|1|A|C|342
8WV1|1|A|C|343
8WV1|1|A|A|344
8WV1|1|A|G|345
8WV1|1|A|A|346
8WV1|1|A|G|347
8WV1|1|A|A|348
8WV1|1|A|G|349
*
8WV1|1|A|C|361
8WV1|1|A|G|362
8WV1|1|A|U|363
8WV1|1|A|A|364
8WV1|1|A|G|365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

Large ribosomal subunit protein uL24