J3_8WV1_010

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

8WV1|1|A|C|1653, 8WV1|1|A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WV1_010 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1984

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8WV1|1|A|C|1352
8WV1|1|A|A|1353
8WV1|1|A|A|1354
8WV1|1|A|G|1355
*
8WV1|1|A|C|1651
8WV1|1|A|G|1652
8WV1|1|A|C|1653
8WV1|1|A|A|1654
8WV1|1|A|A|1655
8WV1|1|A|A|1656
8WV1|1|A|C|1657
*
8WV1|1|A|G|1666
8WV1|1|A|U|1667
8WV1|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34