J3_8WV1_019

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WV1_019 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.1167

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8WV1|1|a|G|30
8WV1|1|a|C|31
*
8WV1|1|a|G|500
8WV1|1|a|U|501
8WV1|1|a|G|502
8WV1|1|a|A|503
8WV1|1|a|A|504
8WV1|1|a|A|505
8WV1|1|a|A|506
8WV1|1|a|G|507
*
8WV1|1|a|C|534
8WV1|1|a|C|535

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

Large ribosomal subunit protein uL24