J3_8WV1_032
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 8WV1|1|a|A|2220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_032 not in the Motif Atlas
- Homologous match to J3_9DFE_014
- Geometric discrepancy: 0.1363
- The information below is about J3_9DFE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WV1|1|a|U|2113
8WV1|1|a|U|2114
8WV1|1|a|G|2115
*
8WV1|1|a|C|2218
8WV1|1|a|U|2219
8WV1|1|a|A|2220
8WV1|1|a|A|2221
8WV1|1|a|C|2222
*
8WV1|1|a|G|2235
8WV1|1|a|G|2236
8WV1|1|a|A|2237
8WV1|1|a|C|2238
8WV1|1|a|A|2239
8WV1|1|a|G|2240
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
- Chain h
- Large ribosomal subunit protein bL9
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: