J3_8WV1_034
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8WV1|1|a|A|2530, 8WV1|1|a|U|2531, 8WV1|1|a|U|2575
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_034 not in the Motif Atlas
- Homologous match to J3_9DFE_017
- Geometric discrepancy: 0.1513
- The information below is about J3_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|a|C|2529
8WV1|1|a|A|2530
8WV1|1|a|U|2531
8WV1|1|a|C|2532
*
8WV1|1|a|G|2557
8WV1|1|a|U|2558
8WV1|1|a|U|2559
*
8WV1|1|a|A|2573
8WV1|1|a|U|2574
8WV1|1|a|U|2575
8WV1|1|a|A|2576
8WV1|1|a|A|2577
8WV1|1|a|A|2578
8WV1|1|a|G|2579
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: