J3_8WV1_043

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

8WV1|1|a|A|1348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WV1_043 not in the Motif Atlas

Homologous match to J3_9DFE_010

Geometric discrepancy: 0.1959

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8WV1|1|a|C|1344
8WV1|1|a|G|1345
8WV1|1|a|U|1346
8WV1|1|a|A|1347
8WV1|1|a|A|1348
8WV1|1|a|G|1349
*
8WV1|1|a|C|1671
8WV1|1|a|G|1672
8WV1|1|a|G|1673
*
8WV1|1|a|U|1686
8WV1|1|a|C|1687
8WV1|1|a|A|1688
8WV1|1|a|G|1689

Current chains

Chain a

23S rRNA

Nearby chains