3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
8XSX|1|L5|A|4464, 8XSX|1|L5|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8XSX_011 not in the Motif Atlas
Homologous match to J3_8P9A_063
Geometric discrepancy: 0.0718
The information below is about J3_8P9A_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44047.1
Basepair signature
cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
Number of instances in this motif group
4

Unit IDs

8XSX|1|L5|U|4463
8XSX|1|L5|A|4464
8XSX|1|L5|U|4465
8XSX|1|L5|C|4466
*
8XSX|1|L5|G|4491
8XSX|1|L5|U|4492
8XSX|1|L5|U|4493
*
8XSX|1|L5|A|4507
8XSX|1|L5|C|4508
8XSX|1|L5|U|4509
8XSX|1|L5|A|4510
8XSX|1|L5|A|4511
8XSX|1|L5|U|4512
8XSX|1|L5|A|4513

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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