J3_8XSX_038
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8XSX|1|L7|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XSX_038 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.071
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8XSX|1|L7|C|9
8XSX|1|L7|C|10
8XSX|1|L7|A|11
8XSX|1|L7|U|12
8XSX|1|L7|A|13
8XSX|1|L7|C|14
*
8XSX|1|L7|G|65
8XSX|1|L7|G|66
*
8XSX|1|L7|U|109
8XSX|1|L7|G|110
Current chains
- Chain L7
- 5S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
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