J3_8XU8_009
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XU8_009 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1786
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8XU8|1|2|U|1168
8XU8|1|2|G|1169
8XU8|1|2|G|1170
8XU8|1|2|A|1171
*
8XU8|1|2|U|1468
8XU8|1|2|A|1469
8XU8|1|2|C|1470
*
8XU8|1|2|G|1574
8XU8|1|2|G|1575
8XU8|1|2|A|1576
8XU8|1|2|A|1577
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SK
- Small ribosomal subunit protein eS25A
- Chain t
- Transfer RNA; tRNA
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