J3_8XU8_011

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8XU8|1|2|G|1445, 8XU8|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XU8_011 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.2281

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8XU8|1|2|C|1215
8XU8|1|2|C|1216
8XU8|1|2|A|1217
8XU8|1|2|G|1218
8XU8|1|2|A|1219
8XU8|1|2|C|1220
*
8XU8|1|2|G|1263
8XU8|1|2|G|1264
8XU8|1|2|G|1265
8XU8|1|2|U|1266
8XU8|1|2|G|1267
*
8XU8|1|2|U|1442
8XU8|1|2|U|1443
8XU8|1|2|A|1444
8XU8|1|2|G|1445
8XU8|1|2|A|1446
8XU8|1|2|C|1447
8XU8|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31