J3_8XU8_030

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XU8_030 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2079

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8XU8|1|A|C|1631
8XU8|1|A|A|1632
*
8XU8|1|A|U|1641
8XU8|1|A|A|1642
8XU8|1|A|A|1643
8XU8|1|A|C|1644
8XU8|1|A|U|1645
*
8XU8|1|A|A|1810
8XU8|1|A|G|1811

Current chains

Chain A

25S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein eL27A

Chain i

Large ribosomal subunit protein eL34A

Chain m

Large ribosomal subunit protein eL38