J3_8XXM_001
3D structure
- PDB id
- 8XXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XXM_001 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1748
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XXM|1|S2|A|816
8XXM|1|S2|G|817
8XXM|1|S2|A|818
8XXM|1|S2|G|819
*
8XXM|1|S2|C|829
8XXM|1|S2|A|830
8XXM|1|S2|G|831
*
8XXM|1|S2|C|843
8XXM|1|S2|U|844
8XXM|1|S2|G|845
8XXM|1|S2|G|846
8XXM|1|S2|A|847
8XXM|1|S2|U|848
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: