J3_8XZ3_014
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 8XZ3|1|A|U|31, 8XZ3|1|A|U|536, 8XZ3|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XZ3_014 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2648
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8XZ3|1|A|C|29
8XZ3|1|A|U|30
8XZ3|1|A|U|31
8XZ3|1|A|G|32
*
8XZ3|1|A|C|533
8XZ3|1|A|G|534
8XZ3|1|A|A|535
8XZ3|1|A|U|536
8XZ3|1|A|A|537
8XZ3|1|A|G|538
8XZ3|1|A|C|539
8XZ3|1|A|G|540
8XZ3|1|A|G|541
8XZ3|1|A|A|542
8XZ3|1|A|U|543
8XZ3|1|A|U|544
8XZ3|1|A|A|545
8XZ3|1|A|G|546
8XZ3|1|A|U|547
8XZ3|1|A|A|548
8XZ3|1|A|C|549
*
8XZ3|1|A|G|556
8XZ3|1|A|G|557
8XZ3|1|A|A|558
8XZ3|1|A|A|559
8XZ3|1|A|U|560
8XZ3|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain R
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein uL23
- Chain d
- Large ribosomal subunit protein bL34
Coloring options: