J3_8Y0U_012

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_012 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1758

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C2|A|760
8Y0U|1|C2|G|761
8Y0U|1|C2|A|762
8Y0U|1|C2|G|763
*
8Y0U|1|C2|C|773
8Y0U|1|C2|A|774
8Y0U|1|C2|G|775
*
8Y0U|1|C2|U|785
8Y0U|1|C2|C|786
8Y0U|1|C2|G|787
8Y0U|1|C2|A|788
8Y0U|1|C2|A|789
8Y0U|1|C2|U|790

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A