J3_8Y0U_041
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8Y0U|1|C3|U|60, 8Y0U|1|C3|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y0U_041 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1164
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8Y0U|1|C3|A|44
8Y0U|1|C3|C|45
*
8Y0U|1|C3|G|58
8Y0U|1|C3|A|59
8Y0U|1|C3|U|60
8Y0U|1|C3|A|61
8Y0U|1|C3|C|62
8Y0U|1|C3|G|63
8Y0U|1|C3|U|64
*
8Y0U|1|C3|A|96
8Y0U|1|C3|A|97
8Y0U|1|C3|U|98
8Y0U|1|C3|C|99
8Y0U|1|C3|U|100
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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