J3_8Y0X_002

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8Y0X|1|L5|A|1534, 8Y0X|1|L5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0X_002 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0656

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8Y0X|1|L5|U|1531
8Y0X|1|L5|G|1532
8Y0X|1|L5|A|1533
8Y0X|1|L5|A|1534
8Y0X|1|L5|C|1535
8Y0X|1|L5|U|1536
8Y0X|1|L5|A|1537
*
8Y0X|1|L5|U|1622
8Y0X|1|L5|A|1623
8Y0X|1|L5|G|1624
*
8Y0X|1|L5|C|1640
8Y0X|1|L5|G|1641
8Y0X|1|L5|A|1642
8Y0X|1|L5|A|1643

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37