J3_8Y0X_027

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8Y0X|1|L5|A|1805, 8Y0X|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0X_027 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.413

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8Y0X|1|L5|U|1726
8Y0X|1|L5|U|1727
*
8Y0X|1|L5|A|1802
8Y0X|1|L5|G|1803
8Y0X|1|L5|A|1804
8Y0X|1|L5|A|1805
8Y0X|1|L5|G|1806
*
8Y0X|1|L5|C|1832
8Y0X|1|L5|G|1833
8Y0X|1|L5|U|1834
8Y0X|1|L5|G|1835
8Y0X|1|L5|G|1836
8Y0X|1|L5|A|1837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29