J3_8Y36_016

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

8Y36|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y36_016 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1573

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8Y36|1|A|U|1381
8Y36|1|A|C|1382
8Y36|1|A|G|1383
8Y36|1|A|G|1384
8Y36|1|A|G|1385
8Y36|1|A|U|1386
8Y36|1|A|C|1387
*
8Y36|1|A|G|1418
8Y36|1|A|A|1419
8Y36|1|A|U|1420
8Y36|1|A|A|1421
8Y36|1|A|A|1422
*
8Y36|1|A|U|1439
8Y36|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL23