J3_8Y38_011

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8Y38|1|a|U|880, 8Y38|1|a|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y38_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1342

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8Y38|1|a|C|834
8Y38|1|a|U|835
8Y38|1|a|A|836
8Y38|1|a|A|837
*
8Y38|1|a|U|866
8Y38|1|a|G|867
8Y38|1|a|C|868
8Y38|1|a|A|869
8Y38|1|a|G|870
*
8Y38|1|a|C|877
8Y38|1|a|A|878
8Y38|1|a|U|879
8Y38|1|a|U|880
8Y38|1|a|A|881
8Y38|1|a|A|882
8Y38|1|a|G|883

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain h

Small ribosomal subunit protein uS8