J3_8Y38_024
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UCGGGUC*GAUAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 8Y38|1|A|C|1382, 8Y38|1|A|A|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_024 not in the Motif Atlas
- Homologous match to J3_7A0S_018
- Geometric discrepancy: 0.2486
- The information below is about J3_7A0S_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8Y38|1|A|U|1381
8Y38|1|A|C|1382
8Y38|1|A|G|1383
8Y38|1|A|G|1384
8Y38|1|A|G|1385
8Y38|1|A|U|1386
8Y38|1|A|C|1387
*
8Y38|1|A|G|1418
8Y38|1|A|A|1419
8Y38|1|A|U|1420
8Y38|1|A|A|1421
8Y38|1|A|A|1422
*
8Y38|1|A|U|1439
8Y38|1|A|A|1440
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- Large ribosomal subunit protein uL23
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