J3_8Y39_011

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8Y39|1|a|U|880, 8Y39|1|a|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1342

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8Y39|1|a|C|834
8Y39|1|a|U|835
8Y39|1|a|A|836
8Y39|1|a|A|837
*
8Y39|1|a|U|866
8Y39|1|a|G|867
8Y39|1|a|C|868
8Y39|1|a|A|869
8Y39|1|a|G|870
*
8Y39|1|a|C|877
8Y39|1|a|A|878
8Y39|1|a|U|879
8Y39|1|a|U|880
8Y39|1|a|A|881
8Y39|1|a|A|882
8Y39|1|a|G|883

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain h

Small ribosomal subunit protein uS8