J3_8Y39_019
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8Y39|1|A|U|549, 8Y39|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_019 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.122
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8Y39|1|A|G|30
8Y39|1|A|C|31
*
8Y39|1|A|G|520
8Y39|1|A|U|521
8Y39|1|A|G|522
8Y39|1|A|A|523
8Y39|1|A|A|524
8Y39|1|A|A|525
8Y39|1|A|A|526
8Y39|1|A|G|527
8Y39|1|A|C|528
8Y39|1|A|A|529
8Y39|1|A|C|530
*
8Y39|1|A|G|541
8Y39|1|A|A|542
8Y39|1|A|G|543
8Y39|1|A|U|544
8Y39|1|A|G|545
8Y39|1|A|A|546
8Y39|1|A|A|547
8Y39|1|A|A|548
8Y39|1|A|U|549
8Y39|1|A|A|550
8Y39|1|A|G|551
8Y39|1|A|A|552
8Y39|1|A|A|553
8Y39|1|A|C|554
8Y39|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain O
- Large ribosomal subunit protein bL20
- Chain Q
- Large ribosomal subunit protein uL22
- Chain S
- Large ribosomal subunit protein uL24
Coloring options: