J3_8Y39_026
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CC*GUUAAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 8Y39|1|A|U|2853, 8Y39|1|A|A|2855, 8Y39|1|A|U|2904
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_026 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.2866
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|A|C|2834
8Y39|1|A|C|2835
*
8Y39|1|A|G|2851
8Y39|1|A|U|2852
8Y39|1|A|U|2853
8Y39|1|A|A|2854
8Y39|1|A|A|2855
8Y39|1|A|U|2856
*
8Y39|1|A|A|2902
8Y39|1|A|A|2903
8Y39|1|A|U|2904
8Y39|1|A|C|2905
8Y39|1|A|G|2906
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein bL17
- Chain Z
- Large ribosomal subunit protein bL32
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