J3_8Y39_028
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8Y39|1|a|C|49, 8Y39|1|a|A|51, 8Y39|1|a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_028 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0729
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|G|47
8Y39|1|a|C|48
8Y39|1|a|C|49
8Y39|1|a|U|50
8Y39|1|a|A|51
8Y39|1|a|A|52
8Y39|1|a|U|53
*
8Y39|1|a|A|367
8Y39|1|a|G|368
8Y39|1|a|G|369
8Y39|1|a|G|370
8Y39|1|a|A|371
8Y39|1|a|A|372
8Y39|1|a|U|373
8Y39|1|a|C|374
8Y39|1|a|U|375
*
8Y39|1|a|A|401
8Y39|1|a|G|402
8Y39|1|a|C|403
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- Small ribosomal subunit protein bS16
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