J3_8Y39_030
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 8Y39|1|a|U|661
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_030 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1646
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y39|1|a|C|594
8Y39|1|a|G|595
8Y39|1|a|G|596
*
8Y39|1|a|C|659
8Y39|1|a|U|660
8Y39|1|a|U|661
8Y39|1|a|G|662
8Y39|1|a|A|663
*
8Y39|1|a|U|759
8Y39|1|a|G|760
8Y39|1|a|A|761
8Y39|1|a|C|762
8Y39|1|a|G|763
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
Coloring options: