J3_8Y5L_025

3D structure

PDB id

8Y5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8Y5L|1|3|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5L|1|3|C|826
8Y5L|1|3|U|827
8Y5L|1|3|U|828
8Y5L|1|3|G|829
*
8Y5L|1|3|C|857
8Y5L|1|3|G|858
8Y5L|1|3|G|859
8Y5L|1|3|A|860
8Y5L|1|3|G|861
*
8Y5L|1|3|C|868
8Y5L|1|3|G|869
8Y5L|1|3|U|870
8Y5L|1|3|U|871
8Y5L|1|3|A|872
8Y5L|1|3|A|873
8Y5L|1|3|G|874

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain M

30S ribosomal protein S8

Chain Z

30S ribosomal protein S21