J3_8Y5L_031
3D structure
- PDB id
- 8Y5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y5L_031 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.1313
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Y5L|1|3|C|1063
8Y5L|1|3|G|1064
8Y5L|1|3|U|1065
8Y5L|1|3|C|1066
8Y5L|1|3|A|1067
8Y5L|1|3|G|1068
*
8Y5L|1|3|C|1107
8Y5L|1|3|G|1108
8Y5L|1|3|C|1109
8Y5L|1|3|A|1110
8Y5L|1|3|A|1111
8Y5L|1|3|C|1112
8Y5L|1|3|C|1113
*
8Y5L|1|3|G|1187
8Y5L|1|3|A|1188
8Y5L|1|3|U|1189
8Y5L|1|3|G|1190
8Y5L|1|3|A|1191
8Y5L|1|3|C|1192
8Y5L|1|3|G|1193
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S5
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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