J3_8Y5P_001

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_001 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.1271

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8Y5P|1|1|G|30
8Y5P|1|1|C|31
*
8Y5P|1|1|G|474
8Y5P|1|1|C|475
8Y5P|1|1|G|476
8Y5P|1|1|A|477
8Y5P|1|1|A|478
8Y5P|1|1|A|479
8Y5P|1|1|A|480
8Y5P|1|1|G|481
*
8Y5P|1|1|C|509
8Y5P|1|1|C|510

Current chains

Chain 1

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24