J3_8Y5P_007

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_007 not in the Motif Atlas

Geometric match to J3_9DFE_008

Geometric discrepancy: 0.157

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8Y5P|1|1|C|698
8Y5P|1|1|A|699
8Y5P|1|1|G|700
*
8Y5P|1|1|C|732
8Y5P|1|1|G|733
8Y5P|1|1|A|734
8Y5P|1|1|A|735
8Y5P|1|1|C|736
*
8Y5P|1|1|G|760
8Y5P|1|1|A|761
8Y5P|1|1|U|762
8Y5P|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2