J3_8Y5Q_002
3D structure
- PDB id
- 8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8Y5Q|1|1|A|504, 8Y5Q|1|1|A|508
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y5Q_002 not in the Motif Atlas
- Geometric match to J3_5J7L_066
- Geometric discrepancy: 0.1343
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Y5Q|1|1|G|30
8Y5Q|1|1|C|31
*
8Y5Q|1|1|G|474
8Y5Q|1|1|C|475
8Y5Q|1|1|G|476
8Y5Q|1|1|A|477
8Y5Q|1|1|A|478
8Y5Q|1|1|A|479
8Y5Q|1|1|A|480
8Y5Q|1|1|G|481
8Y5Q|1|1|A|482
8Y5Q|1|1|A|483
8Y5Q|1|1|C|484
*
8Y5Q|1|1|G|496
8Y5Q|1|1|A|497
8Y5Q|1|1|G|498
8Y5Q|1|1|U|499
8Y5Q|1|1|G|500
8Y5Q|1|1|A|501
8Y5Q|1|1|A|502
8Y5Q|1|1|A|503
8Y5Q|1|1|A|504
8Y5Q|1|1|A|505
8Y5Q|1|1|G|506
8Y5Q|1|1|A|507
8Y5Q|1|1|A|508
8Y5Q|1|1|C|509
8Y5Q|1|1|C|510
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
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