J3_8YDE_031
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDE_031 not in the Motif Atlas
- Geometric match to J3_8B0X_010
- Geometric discrepancy: 0.0918
- The information below is about J3_8B0X_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YDE|1|3|C|1063
8YDE|1|3|G|1064
8YDE|1|3|U|1065
8YDE|1|3|C|1066
8YDE|1|3|A|1067
8YDE|1|3|G|1068
*
8YDE|1|3|C|1107
8YDE|1|3|G|1108
8YDE|1|3|C|1109
8YDE|1|3|A|1110
8YDE|1|3|A|1111
8YDE|1|3|C|1112
8YDE|1|3|C|1113
*
8YDE|1|3|G|1187
8YDE|1|3|A|1188
8YDE|1|3|U|1189
8YDE|1|3|G|1190
8YDE|1|3|A|1191
8YDE|1|3|C|1192
8YDE|1|3|G|1193
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S5
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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