J3_8YDF_013
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 8YDF|1|1|A|2198
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_013 not in the Motif Atlas
- Geometric match to J3_8B0X_021
- Geometric discrepancy: 0.0998
- The information below is about J3_8B0X_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|1|C|2091
8YDF|1|1|U|2092
8YDF|1|1|G|2093
*
8YDF|1|1|C|2196
8YDF|1|1|U|2197
8YDF|1|1|A|2198
8YDF|1|1|A|2199
8YDF|1|1|C|2200
*
8YDF|1|1|G|2223
8YDF|1|1|G|2224
8YDF|1|1|A|2225
8YDF|1|1|C|2226
8YDF|1|1|A|2227
8YDF|1|1|G|2228
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
- Chain g
- 50S ribosomal protein L9
- Chain x
- 50S ribosomal protein L28
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