J3_8YDG_012

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YDG_012 not in the Motif Atlas

Geometric match to J3_8B0X_035

Geometric discrepancy: 0.1525

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8YDG|1|1|G|1424
8YDG|1|1|G|1425
8YDG|1|1|G|1426
8YDG|1|1|A|1427
8YDG|1|1|C|1428
8YDG|1|1|G|1429
*
8YDG|1|1|C|1564
8YDG|1|1|C|1565
*
8YDG|1|1|G|1568
8YDG|1|1|A|1569
8YDG|1|1|A|1570
8YDG|1|1|A|1571
8YDG|1|1|A|1572
8YDG|1|1|G|1573
8YDG|1|1|C|1574

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2