J3_8YDG_023
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8YDG|1|3|U|723
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDG_023 not in the Motif Atlas
- Geometric match to J3_8B0X_003
- Geometric discrepancy: 0.1476
- The information below is about J3_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YDG|1|3|U|672
8YDG|1|3|A|673
*
8YDG|1|3|U|717
8YDG|1|3|A|718
8YDG|1|3|C|719
8YDG|1|3|C|720
8YDG|1|3|G|721
8YDG|1|3|G|722
8YDG|1|3|U|723
8YDG|1|3|G|724
8YDG|1|3|G|725
*
8YDG|1|3|C|732
8YDG|1|3|G|733
8YDG|1|3|G|734
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S6, fully modified isoform
- Chain P
- 30S ribosomal protein S11
- Chain T
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
Coloring options: