J3_8YDH_005
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8YDH|1|1|U|321, 8YDH|1|1|C|323
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDH_005 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.0879
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8YDH|1|1|G|297
8YDH|1|1|G|298
8YDH|1|1|A|299
8YDH|1|1|A|300
8YDH|1|1|G|301
*
8YDH|1|1|C|316
8YDH|1|1|G|317
8YDH|1|1|C|318
8YDH|1|1|G|319
8YDH|1|1|A|320
8YDH|1|1|U|321
8YDH|1|1|A|322
8YDH|1|1|C|323
8YDH|1|1|A|324
8YDH|1|1|G|325
*
8YDH|1|1|C|337
8YDH|1|1|G|338
8YDH|1|1|U|339
8YDH|1|1|A|340
8YDH|1|1|C|341
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
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