J3_8YLD_006
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8YLD|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_006 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.168
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8YLD|1|2|A|881
8YLD|1|2|U|882
8YLD|1|2|C|883
8YLD|1|2|A|884
*
8YLD|1|2|U|928
8YLD|1|2|A|929
8YLD|1|2|A|930
8YLD|1|2|C|931
8YLD|1|2|U|932
8YLD|1|2|A|933
8YLD|1|2|C|934
8YLD|1|2|U|935
8YLD|1|2|G|936
*
8YLD|1|2|C|943
8YLD|1|2|A|944
8YLD|1|2|U|945
8YLD|1|2|U|946
8YLD|1|2|U|947
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: