J3_8YLD_012
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8YLD|1|2|A|1217, 8YLD|1|2|G|1445, 8YLD|1|2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_012 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.2258
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|C|1215
8YLD|1|2|C|1216
8YLD|1|2|A|1217
8YLD|1|2|G|1218
8YLD|1|2|A|1219
8YLD|1|2|C|1220
*
8YLD|1|2|G|1263
8YLD|1|2|G|1264
8YLD|1|2|G|1265
8YLD|1|2|U|1266
8YLD|1|2|G|1267
*
8YLD|1|2|U|1442
8YLD|1|2|U|1443
8YLD|1|2|A|1444
8YLD|1|2|G|1445
8YLD|1|2|A|1446
8YLD|1|2|C|1447
8YLD|1|2|G|1448
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
- Chain x
- Elongation factor 2
Coloring options: