J3_8YLD_042
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8YLD|1|A|A|817, 8YLD|1|A|G|924, 8YLD|1|A|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_042 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.135
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|U|814
8YLD|1|A|G|815
8YLD|1|A|A|816
8YLD|1|A|A|817
8YLD|1|A|C|818
8YLD|1|A|U|819
8YLD|1|A|A|820
*
8YLD|1|A|U|905
8YLD|1|A|A|906
8YLD|1|A|G|907
*
8YLD|1|A|C|923
8YLD|1|A|G|924
8YLD|1|A|A|925
8YLD|1|A|A|926
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
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