J3_8YLR_008

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLR_008 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2705

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8YLR|1|2|C|1161
8YLR|1|2|C|1162
8YLR|1|2|A|1163
8YLR|1|2|G|1164
*
8YLR|1|2|C|1581
8YLR|1|2|U|1582
8YLR|1|2|A|1583
8YLR|1|2|G|1584
8YLR|1|2|U|1585
8YLR|1|2|A|1586
8YLR|1|2|A|1587
*
8YLR|1|2|U|1609
8YLR|1|2|G|1610
8YLR|1|2|A|1611
8YLR|1|2|U|1612
8YLR|1|2|U|1613
8YLR|1|2|A|1614
8YLR|1|2|C|1615
8YLR|1|2|G|1616

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A