J3_8YLR_017
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8YLR|1|A|U|117, 8YLR|1|A|G|120, 8YLR|1|A|A|121, 8YLR|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLR_017 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.094
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|A|C|113
8YLR|1|A|A|114
8YLR|1|A|A|115
8YLR|1|A|A|116
8YLR|1|A|U|117
8YLR|1|A|U|118
8YLR|1|A|U|119
8YLR|1|A|G|120
8YLR|1|A|A|121
8YLR|1|A|A|122
8YLR|1|A|A|123
*
8YLR|1|A|U|149
8YLR|1|A|A|150
8YLR|1|A|A|151
8YLR|1|A|U|152
8YLR|1|A|U|153
8YLR|1|A|U|154
8YLR|1|A|G|155
8YLR|1|A|G|156
8YLR|1|A|A|157
8YLR|1|A|G|158
*
8YLR|1|A|C|263
8YLR|1|A|G|264
8YLR|1|A|A|265
8YLR|1|A|A|266
8YLR|1|A|G|267
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein eL8A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain j
- Large ribosomal subunit protein uL29A
- Chain k
- Large ribosomal subunit protein eL36A
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