J3_8YLR_019
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8YLR|1|A|U|343, 8YLR|1|A|A|351, 8YLR|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLR_019 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.1057
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
8YLR|1|A|C|340
8YLR|1|A|G|341
8YLR|1|A|A|342
8YLR|1|A|U|343
8YLR|1|A|A|344
8YLR|1|A|G|345
8YLR|1|A|C|346
8YLR|1|A|G|347
8YLR|1|A|A|348
8YLR|1|A|A|349
8YLR|1|A|C|350
8YLR|1|A|A|351
8YLR|1|A|A|352
8YLR|1|A|G|353
8YLR|1|A|U|354
8YLR|1|A|A|355
8YLR|1|A|C|356
*
8YLR|1|A|G|363
8YLR|1|A|G|364
8YLR|1|A|A|365
8YLR|1|A|A|366
8YLR|1|A|A|367
8YLR|1|A|G|368
*
8YLR|1|C|C|21
8YLR|1|C|U|22
8YLR|1|C|U|23
8YLR|1|C|G|24
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: