J3_8YLR_025

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLR_025 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1649

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8YLR|1|A|G|1230
8YLR|1|A|A|1231
8YLR|1|A|C|1232
*
8YLR|1|A|G|1256
8YLR|1|A|C|1257
8YLR|1|A|U|1258
8YLR|1|A|A|1259
8YLR|1|A|A|1260
8YLR|1|A|G|1261
8YLR|1|A|G|1262
*
8YLR|1|A|C|1277
8YLR|1|A|A|1278
8YLR|1|A|C|1279

Current chains

Chain A

25S rRNA

Nearby chains