J3_8YLR_029
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 8YLR|1|A|C|1556, 8YLR|1|A|A|1558, 8YLR|1|A|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|A|A|1537
8YLR|1|A|G|1538
8YLR|1|A|A|1539
8YLR|1|A|U|1540
8YLR|1|A|G|1541
8YLR|1|A|G|1542
*
8YLR|1|A|C|1551
8YLR|1|A|G|1552
8YLR|1|A|U|1553
8YLR|1|A|U|1554
8YLR|1|A|U|1555
8YLR|1|A|C|1556
8YLR|1|A|A|1557
8YLR|1|A|A|1558
8YLR|1|A|A|1559
8YLR|1|A|G|1560
8YLR|1|A|G|1561
*
8YLR|1|A|C|1579
8YLR|1|A|A|1580
8YLR|1|A|C|1581
8YLR|1|A|C|1582
8YLR|1|A|A|1583
8YLR|1|A|U|1584
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain l
- Large ribosomal subunit protein eL37A
Coloring options: