J3_8YLR_032
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 8YLR|1|A|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLR_032 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3029
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|A|A|2432
8YLR|1|A|U|2433
8YLR|1|A|U|2434
8YLR|1|A|G|2435
*
8YLR|1|A|C|2512
8YLR|1|A|U|2513
8YLR|1|A|U|2514
8YLR|1|A|A|2515
8YLR|1|A|U|2516
*
8YLR|1|A|A|2591
8YLR|1|A|G|2592
8YLR|1|A|A|2593
8YLR|1|A|C|2594
8YLR|1|A|A|2595
8YLR|1|A|U|2596
8YLR|1|A|U|2597
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain k
- Large ribosomal subunit protein eL36A
Coloring options: